Additional Best Practice Recommendations in Using R with Panopticon
With an R transform or the Rserve connector in Panopticon, it is fairly quick and easy to enter some short code snippet and use the result. However, as a project grows, and if a solution is moved into production and becomes business critical, you need more structure in your use of R and Rserve with Panopticon:
q Code should be made into functions, even if used only in one place and even if the code content is very brief. Thereby, the operations performed by each function will be contained and you avoid the risk of naming conflicts and contamination in the global environment.
q Ensure you handle exceptions in the code you write. For example, when applying an R transform to data, you can do an initial check in your code to see if the dataset is either zero-row or has any rows. In which case, you want to terminate and just return the empty dataset. You should also use tryCatch clauses, whereby in the event of an error or a warning, you could, for example, insert the error/warning message into the designated column in your dataset and then return it to Panopticon. If there is no error, the same column could contain a plain "OK" or similar as an indicator of a no-errors result.
q Functions should ideally be turned into a package. The benefit of that is mainly about the possibility of adding unit testing and automating dependency package imports.
q Your package should have unit tests that are run when building the package.
q Your package should import any other packages that you have a dependency on.
q Developing, Testing and Debugging the package should happen in a proper IDE, where proper debugging tools and full error messages can be monitored easily. For testing and debugging, some boiler-plate code snippets and parameter input data can be prepared, to mimic the input which could come from Panopticon parameters when the code is used via Panopticon.
q In Panopticon, the code field of the transform or connector should contain an absolute mininum of code; perhaps as little as a single function call, where the function takes the necessary arguments coming from Panopticon parameters.
q With R and Rserve, it should be configured to load (import) your packages on startup, which will avoid the overhead of repeated loading of the packages upon each call.